Curated metadata from SPET genotyping of five European forest tree species

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Dataset information

Country of origin
Updated
2025.11.29 00:00
Created
2025.01.01
Available languages
English
Keywords
Conifer, Genetic Diversity, Accession Numbers, Biodiversity Conservation, SNPs, Species
Quality scoring

Dataset description

This dataset contains curated and harmonised metadata extracted from five NCBI BioProjects associated with the H2020 GenTree SPET genotyping of Abies alba (AA), Pinus cembra (PC), Pinus halepensis (PH), Pinus nigra (PN) and Taxus baccata (TB). Metadata fields include sample identifiers, organism, experiment information, sequencing platform, library strategy and run-level attributes. Raw FASTQ files are not included in this Zenodo record. These can be accessed directly through the corresponding NCBI SRA BioProjects and SRP directories:• PRJNA791225 (A. alba): https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)• PRJNA791226 (P. cembra): https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)• PRJNA791282 (P. halepensis): https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)• PRJNA791288 (P. nigra): https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)• PRJNA791291 (T. baccata): https://identifiers.org/ncbi/insdc.sra:SRP384501(2022) The metadata included here were cleaned, standardised and merged across projects to support the analyses described in the associated manuscript. Users may reuse these metadata in accordance with the NCBI data usage policy and the license of this Zenodo deposit.
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