Karolinska Institutet catalog Open data in a single API request

Datasets published by Karolinska Institutet. datasets available on official portal for European data

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Available datasets

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DNA sequencing data in MDS-patients treated with allogeneic transplantation Open Data

The deposited data consists of 47 bam files for targeted DNA sequencing and somatic mutation list...

Issued on 2023-12-18T15:42:49.179803Z

DNA sequencing data in MDS-patients treated with allogeneic transplantation details >

10X single-cell RNA sequencing of bone marrow cells from MDS-RS patients and healthy donors Open Data

This dataset consists of single-cell RNA sequencing data of bone marrow cells (CD34+ stem cells,...

Issued on 2023-10-19T13:51:47.074570Z

10X single-cell RNA sequencing of bone marrow cells from MDS-RS patients and healthy donors details >

Bulk RNA sequencing of bone marrow cells from MDS-RS patients and healthy donors Open Data

This dataset consists of bulk RNA sequencing data of MACS-separated bone marrow cells (CD34+ stem...

Issued on 2023-10-19T13:51:02.786065Z

Bulk RNA sequencing of bone marrow cells from MDS-RS patients and healthy donors details >

Percutaneous absorption of thirty-eight organic solvents in vitro using pig skin Open Data

We tested a larger number of organic solvents with the same experimental set up, using skin from...

Issued on 2018-09-28T00:00:00Z

Percutaneous absorption of thirty-eight organic solvents in vitro using pig skin details >

A DNA-nanoassembly-based approach to map membrane protein nanoenvironments Open Data

Most proteins at the plasma membrane are not uniformly distributed but localize to dynamic domains...

Issued on 2021-06-24T15:02:32.501286Z

A DNA-nanoassembly-based approach to map membrane protein nanoenvironments details >

Rotational Thromboelastometry predicts care level in COVID-19 Open Data

The objective of the study was to test whether Rotational Thromboelastometry (ROTEM) indicate...

Issued on 2020-08-24T05:49:18.338287Z

Rotational Thromboelastometry predicts care level in COVID-19 details >

TARGET-seq genotyped single-cell RNA sequencing of hematopoietic stem cells and... Open Data

This dataset consists of TARGETseq (genotype-targeted plate-based SmartSeq2) single-cell RNA...

Issued on 2024-04-18T13:21:58.662934Z

TARGET-seq genotyped single-cell RNA sequencing of hematopoietic stem cells and... details >

Basic data for Elevated plasma phospholipid n-3 docosapentaenoic acid concentrations during... Open Data

This data was used in a study investigating plasma phospholipid fatty acid profiles during...

Issued on 2023-05-23T13:35:28.178836Z

Basic data for Elevated plasma phospholipid n-3 docosapentaenoic acid concentrations during... details >

TMT proteomics of erythroblasts from healthy donors and erythroblasts/ring sideroblasts from MDS-RS... Open Data

This dataset consists of semi-quantitative 10-plex TMT proteomics analysis of FACS-separated bone...

Issued on 2023-10-19T13:50:17.530755Z

TMT proteomics of erythroblasts from healthy donors and erythroblasts/ring sideroblasts from MDS-RS... details >

Modeling the Transport of Nuclear Proteins Along Single Skeletal Muscle Cells Open Data

The purpose of this study was to define the factors that control the distribution of nuclear...

Issued on 2020-02-19T00:00:00Z

Modeling the Transport of Nuclear Proteins Along Single Skeletal Muscle Cells details >

Colony whole genome sequencing of hematopoietic stem and progenitor cell-derived colonies from 2... Open Data

This dataset consists of whole genome sequencing data from single cell-derived colonies obtained...

Issued on 2024-04-18T13:28:56.573715Z

Colony whole genome sequencing of hematopoietic stem and progenitor cell-derived colonies from 2... details >

Smart-seq3 and Smart-seq3xpress single-cell RNA sequencing of bone marrow cells from MDS-RS patients Open Data

This dataset consists of Smart-seq3 single-cell RNA sequencing data of purified RS from the bone...

Issued on 2023-10-19T13:52:12.575267Z

Smart-seq3 and Smart-seq3xpress single-cell RNA sequencing of bone marrow cells from MDS-RS patients details >

A multimodal brain imaging dataset on sleep deprivation in young and old humans: The Sleepy Brain... Open Data

The Stockholm Sleepy Brain Study I is a functional brain imaging study of 48 younger (20-30 years)...

Issued on 2021-11-01T09:23:10.395556Z

A multimodal brain imaging dataset on sleep deprivation in young and old humans: The Sleepy Brain... details >

10X single-cell RNA sequencing of hematopoietic stem and progenitor cells from a dual SF3B1-mutant... Open Data

This dataset consists of 10X single-cell RNA sequencing data of bone marrow cells (CD34+ stem cells)...

Issued on 2024-04-18T13:21:03.979730Z

10X single-cell RNA sequencing of hematopoietic stem and progenitor cells from a dual SF3B1-mutant... details >

Data generated for "Serial MRD assessment predicts relapse after transplantation in patients with... Open Data

The study has evaluated the association between measurable residual disease (MRD) determined using...

Issued on 2024-08-23T12:54:03.412122Z

Data generated for "Serial MRD assessment predicts relapse after transplantation in patients with... details >

RNA sequencing of drug combinations for SL-176 and GSK-J4 in neuroblastoma cell lines Open Data

High-risk neuroblastoma remains a deadly disease with a survival rate of only 50-60 %. Prognosis is...

Issued on 2025-03-31T08:42:06.769381Z

RNA sequencing of drug combinations for SL-176 and GSK-J4 in neuroblastoma cell lines details >

Transcriptomics profiling of human PSC cultured under different conditions Open Data

This study has used transcriptome data derived for quality testing of pluripotent stem cells to...

Issued on 2025-01-23T15:04:22.709409Z

Transcriptomics profiling of human PSC cultured under different conditions details >

Evaluating Feature Extraction in Ovarian Cancer Cell Line Co-Cultures Using Deep Neural Networks Open Data

This dataset provides detailed imaging data from various co-culture assays of ovarian cancer and...

Issued on 2025-01-16T13:14:01.695925Z

Evaluating Feature Extraction in Ovarian Cancer Cell Line Co-Cultures Using Deep Neural Networks details >

Improved computational analysis of ribosome dynamics from 5’P degradome data using fivepeseq Open Data

Supplementary information for manuscript: "Improved computational analysis of ribosome dynamics from...

Issued on 2020-09-17T00:00:00Z

Improved computational analysis of ribosome dynamics from 5’P degradome data using fivepeseq details >

Modulation of innate immune response to mRNA vaccination after SARS-CoV-2 infection or sequential... Open Data

### General information This is a dataset record for the research paper "Modulation of innate...

Issued on 2024-05-17T00:00:00Z

Modulation of innate immune response to mRNA vaccination after SARS-CoV-2 infection or sequential... details >

VISION — an open-source software for automated multi-dimensional image analysis of cellular... Open Data

It contains data sets from Weber et al, Journal of Cell Science, 2024...

Issued on 2024-10-17T00:00:00Z

VISION — an open-source software for automated multi-dimensional image analysis of cellular... details >

Multi-site assessment of reproducibility in high-content live cell imaging data Open Data

This dataset contains the raw images as well as the analysis pipelines and scripts used in the paper...

Issued on 2022-12-01T00:00:00Z

Multi-site assessment of reproducibility in high-content live cell imaging data details >

Influence of the extracellular domain size on the dynamic behavior of membrane proteins Open Data

This item contains datasets from Gurdap et al, Biophysical Journal, 2022...

Issued on 2022-09-19T00:00:00Z

Influence of the extracellular domain size on the dynamic behavior of membrane proteins details >

Archaic humans have contributed to large-scale variation in modern human T cell receptor genes Open Data

The dataset contains the repertoire sequencing data from 45 adult volunteers. For each case 4...

Issued on 2023-03-17T00:00:00Z

Archaic humans have contributed to large-scale variation in modern human T cell receptor genes details >

COMMUNITY study Open Data

The COMMUNITY pandemic surveillance cohort is a longitudinal cohort study including 2149 healthcare...

Issued on 2022-05-02T00:00:00Z

COMMUNITY study details >

STODS: the Swedish Twin project Of Disability pension and Sickness absence Open Data

STODS was started in 2008, aiming to investigate risk factors and consequences of sickness absence...

Issued on 2018-04-05T13:51:45Z

STODS: the Swedish Twin project Of Disability pension and Sickness absence details >

How Does Liquid-Liquid Phase Separation in Model Membranes Reflect Cell Membrane Heterogeneity? Open Data

It contains figures from Sych et al, Membranes, 2021. First figure shows visualization of phase...

Issued on 2021-05-06T00:00:00Z

How Does Liquid-Liquid Phase Separation in Model Membranes Reflect Cell Membrane Heterogeneity? details >

High-throughput measurement of the content and properties of nano-sized bioparticles with... Open Data

This item containst data sets for Sych et al, Nature Biotechology, 2023.  It contains raw...

Issued on 2023-05-03T00:00:00Z

High-throughput measurement of the content and properties of nano-sized bioparticles with... details >

Women's lifestyle and health (WLH) Open Data

Oral contraceptives, use of hormone replacement therapy, dietary habits and other lifestyle factors...

Issued on 2015-04-13T07:01:48Z

Women's lifestyle and health (WLH) details >

Frequent longitudinal blood microsampling and proteome monitoring identify disease markers and... Open Data

The work has been published as Parajuli et al. (2025) Diabetologia...

Issued on 2025-07-31T00:00:00Z

Frequent longitudinal blood microsampling and proteome monitoring identify disease markers and... details >

Data for: "Spatial evidence for carcinoma in situ (CIS) as an entity in human papillomavirus... Open Data

Human papillomavirus (HPV)-associated tonsillar squamous cell carcinoma (TSCC) is suggested to arise...

Issued on 2025-06-09T14:57:02.331072Z

Data for: "Spatial evidence for carcinoma in situ (CIS) as an entity in human papillomavirus... details >

Source Data and Code for "GPSeq maps the radial organization of eukaryotic genomes along the nuclear... Open Data

Here contains the source data (in .rds) and source code (in .r) to reproduce the figures of...

Issued on 2025-05-22T00:00:00Z

Source Data and Code for "GPSeq maps the radial organization of eukaryotic genomes along the nuclear... details >

Bulk RNA sequencing of erythroblasts from a pair of SF3B1-mutated and SF3B1-wildtype induced... Open Data

This dataset consists of bulk RNA sequencing data of MACS-separated GPA+ erythroblasts obtained from...

Issued on 2025-08-12T10:20:35.213602Z

Bulk RNA sequencing of erythroblasts from a pair of SF3B1-mutated and SF3B1-wildtype induced... details >

5PSeq Explorer Data Freeze Open Data

This data freeze accompanies 5PSeq Explorer and it contains 775 5PSeq datasets compiled from 18...

Issued on 2026-02-05T15:19:32.923601Z

5PSeq Explorer Data Freeze details >

Sequencing data of DNA nanostructures selected for uptake in cells Open Data

Selection of DNA nanostructures by cellular uptake studied by high throughput sequencing. We...

Issued on 2026-03-12T00:00:00Z

Sequencing data of DNA nanostructures selected for uptake in cells details >
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